Projects and Collaborations
There are three major topics of collaboration in the CBSU at
the present:
- Web computing and software development
Customizing existing software and creating
web-based interfaces
- Protein structure prediction
Using advanced software tools and our expertise
in this topic in order to help building 3D structures and models of proteins
- Data management, data analysis and data mining
Computational service for high-throughput genomics and functional
genomics research projects
We are currently
collaborating with the following research groups (in chronological order):
- Prof. Gus Aguirre's group at the Center for Canine Genetics & Reproduction (James Baker
Institute, Cornell University)
Software
development, web computing and protein modeling
- Prof. Sondra Lazarowitz's group (Plant
Biology, Cornell University)
Protein structure prediction and
modeling.
- Prof. Stephen Winans's group (Department of Microbiology,
Cornell University)
Protein structure prediction and modeling.
- Prof. Martin Wiedmann's group (Food Science, Cornell
University)
Data management and development of web-based database system.
- Prof. Dave Lin's group (Department of Biomedical Sciences,
Cornell University)
DNA Microarray
- Prof. Steve Tanksley's group (Department of Plant Breeding,
Cornell University)
Plant genomic databases
- Prof. Rosemary Loria's group (Department of Plant Pathology,
Cornell University)
Protein structure prediction and modeling, genomic
sequence assembly, gene annotation.
- Prof. Klaas van Wijk's group (Department of Plant Biology,
Cornell University)
Modeling protein complexes, proteomic databases, large scale protein
structure prediction.
- Prof. David Stern's group (Boyce Thompson Institute,
Cornell University)
Software development, genomic sequence analysis.
- Prof. Jocelyn Rose's group (Department of Plant Biology,
Cornell University)
Protein structure prediction and modeling.
- Prof. Ping Wang's group (Department of Entomology,
Cornell University)
Protein structure prediction and modeling.
- Prof. Susan McCouch (Department of Plant Breeding, Cornell University)
Development of web-based genomic software, software consultations.
- Prof. Andrej Sali (Rockefeller University)
Porting of the MODELLER software package to MS Windows computing environment.
- Prof. Mark
Sorrells (Department of Plant Breeding,
Cornell University)
Massively parallel
sequence data analysis.
- Prof. Jian Hua (Department of Plant
Biology, Cornell University)
Protein structure prediction.
- Prof.
Douglas Antczak (James A. Baker
Institute, Cornell University)
EST sequence data analysis.
- Prof. Rebecca Nelson (Department of Plant
Pathology, Cornell University)
Rice BAC genome sequence data mining.
- Prof. James Giovannoni (Boyce Thompson
Institute, Cornell University)
Massively
parallel sequence data analysis.
- Prof. Noa Noy (CALS Nutritional Science,
Cornell University)
Sequence data analysis.
- Prof. James MacLeod (James A. Baker
Institute, Cornell University)
EST sequence data analysis.
- Prof. Haiyang Wang (Boyce Thompson
Institute, Cornell University)
Sequence data analysis.
- Prof. Kathryn Anderson (Developmental
Genetics Laboratory, Memorial Sloan-Kettering Cancer Center)
Protein structure prediction and modeling.
- Prof. Charles F. Aquadro (Molecular
Biology & Genetics, Cornell University)
Protein structure prediction and modeling.
- Prof. Daniel Klessig (Boyce Thompson
Institute, Cornell University)
Protein structure prediction and modeling.
- Prof. Rasmus Nielsen (Department of
Biometrics, Cornell University)
Development of web-based software.
- Carlos Bustamante (Biological
Statistics and Computational Biology, Cornell
University)
Development of web-based parallel software.
- Dave Matthews (Plant
Breeding and Genetics, Cornell University)
Protein structure prediction and modeling.
- Stewart M. Gray (Department of
Plant Pathology, Cornell University)
Protein structure prediction and modeling.
- June Nasrallah (Department of Plant
Biology, Cornell University)
Protein structure prediction and modeling.
- Keith Perry (Department of Plant
Pathology, Cornell University)
Protein structure prediction and modeling.
- Harold A. Scheraga (Department of
Chemistry and Chemical Biology, Cornell
University)
Ribonuclease A folding kinetics, ab initio protein structure
prediction.
- Michael I. Kotlikoff (Department of
Biomedical Sciences, Cornell University)
Data management and sequence analysis.
- Yung-Fu Chang (Population Medicine &
Diagnostic Sciences, Cornell University)
Genome sequence alignment.
- Jeff Doyle (Department of Plant
Biology, Cornell University)
Phylogenetic analysis on HPC.
- Charles McCormick (CALS Nutritional
Science, Cornell University)
Microarray data analysis.
- Nancy Burton-Wurster (James A. Baker
Institute, Cornell University)
Microarray gene annotation.
To initiate a new project or
collaboration please contact us by e-mail
or via the Web.