LOOPP Potential

Thom2 potential  is described in the paper "Linear Programming Optimization and a Double Statistical Filter for Protein Threading Protocols Linear Programming Optimization and a Double Statistical" , Jaroslaw Meller and Ron Elber. PROTEINS: Structure, Function, and Genetics 45:241261 (2001).

Download Thom2 potential here. This file contains a table of scores of amino acid placed at structural  environment of Thom2. The score are stored by columns of ALA, ARG, ASN, ASP, CYS, GLN, GLU, GLY, HIS, ILE,  LEU ,LYS, MET, PHE, PRO, SER, THR, TRP, TYR, VAL, GAP.

TE13 potential is described in the paper " Distance-Dependent, Pair Potential for Protein Folding Results From Linear Optimization", Dror Tobi and Ron Elber. PROTEINS: Structure, Function, and Genetics 41:4046 (2000)

Download TE13 potential here. This file contains a table  of the pair potential stored according to the 13 steps.

LOOPP Data base

Loopp data base contains a list of proteins listed by the name used in  protein data bank and domains named according to scop. The list can be downloaded here.