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BioHPC Lab:
User Guide

 


Quick Start Guide

  1. Get an account


  2. First, you need to get an account for BioHPC Lab. Please fill out and submit this Web form stating your affiliation (department or institute at Cornell; for non-Cornell please provide your institution name and you Cornell collaborator affiliation) and Cornell Netid. If you require access to any restricted resources please state so and let us know to which resources and why.
    Your user name will be usually the same as your Cornell Netid, but the password will be different than one associated with Netid. When your account is created you will receive an e-mail with your login information and password. You can change this password after first login, please see the submenu under your account name (rightmost menu tab, submenu "Change password").  
     
  3. Create Lab Credit Account(s) or get added to an existing one.


  4. You need a credit account for each type of workstations used (currently "general", "cbsulm01" and "cbsulm02"), you can set up one using "My Credit Accounts" submenu. Click on "New Credit Account", choose appropriate account type, name it and create.
    If you are a member of a group that already has lab credit accounts you can ask account owner to be added to it. You can also add other users to yours.
     
  5. Buy or transfer hours if needed.


  6. You need to add hours to your account unless you have been added to an existing one with purchased hours. You can buy hours by clicking "Add Hours" link in "Action" column on "My Lab Credit Accounts" page. Each new Cornell PI is entitled to a free credit of 100hrs ("general" type). You can transfer hours between lab credit accounts (bottom of "My Lab Credit Accounts" page).
     
  7. Reserve workstation(s) 


  8. Once you have appropriate credit account with hours you can go to "Reservations" page (submenu of both "Computing Lab" and "User:" tabs). Your account will be charged by wall clock hours used (down to appropriate fraction of an hour). Only actually used hours are charged, if you cancel your reservation before it starts nothing is charged, if you cancel before it ends only the actual hours between start and cancel are charged. NOTE: "time used" is defined as the wall clock time elapsed when your reservation is active - it has nothing to do with how much you actually used the CPU/RAM etc during this time.
     
  9. Transfer data, connect and compute

    You can connect to your workstation(s) and transfer data in many ways. Please refer to this document and our user guide for detailed instructions. Remember: you can always transfer data from your home directory without a reservation via cbsulogin machine (full name cbsulogin.tc.cornell.edu, only ssh and sftp connections, backup login/transfer server is cbsulogin2). Overview of our storage is provided here, for more information on managing our networked storage (storage allocations, reserving extra storage) please refer to Lab storage guide. You can now also use Globus Online to transfer data to/from your home directory, Globus at BioHPC Lab and Using Globus to Share Data for details.


 

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